> For the complete documentation index, see [llms.txt](https://help.dragenarray.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://help.dragenarray.illumina.com/product-guides/dragen-array-cloud-analysis/overview.md).

# Analysis Type Details

## DRAGEN Array Cloud Analysis Overview

DRAGEN Array Cloud utilizes the user-friendly graphical interface of BaseSpace Sequence Hub to simplify DRAGEN Array analysis setup and kickoff. Optional integration with the iScan System allows data to be streamed directly from the instrument to the cloud platform. Analysis data is stored on the Illumina Connected Platform providing secure storage for both microarray and sequencing data.

DRAGEN Array Cloud supports multiple types of analysis, each with specific configuration options and requirements. Select an analysis type below to learn more about its specific configuration options, thresholds, and recommendations:

* [DRAGEN Array Genotyping and QC](/product-guides/dragen-array-cloud-analysis/overview/dragen-array-genotyping.md)
* [DRAGEN Array PGx CNV Calling](/product-guides/dragen-array-cloud-analysis/overview/dragen-array-pgx-cnv-calling.md)
* [DRAGEN Array PGx Star Allele Annotation](/product-guides/dragen-array-cloud-analysis/overview/dragen-array-pgx-star-allele.md)
* [DRAGEN Array Cytogenetics Analysis](/product-guides/dragen-array-cloud-analysis/overview/dragen-array-cytogenetics-analysis.md)
* [DRAGEN Array Methylation QC](/product-guides/dragen-array-cloud-analysis/overview/dragen-array-methylation-qc.md)

For information about supported products, versions, and genome builds for each analysis type, see [DRAGEN Array Applications](/overview/our-features.md).

{% hint style="warning" %}
The following v1.0.0 cloud analysis pipeline versions were deprecated in Q1 2026. This applies only to these specific pipeline versions, not to the analysis types in general.

* DRAGEN Array - Methylation QC - 1-0-0
* DRAGEN Array - PGx - Star Allele Annotation - 1-0-0
* DRAGEN Array - Genotyping - 1-0-0
* DRAGEN Array - PGx - CNV Calling - 1-0-0
  {% endhint %}


---

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